IL_5IT9_091

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUGCCUAG*CAAUAUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94286.1

Basepair signature

cWW-cWW-L-R-R-R-R-L-L-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

5IT9|1|i|G|6130
5IT9|1|i|A|6131
5IT9|1|i|U|6132
5IT9|1|i|G|6133
5IT9|1|i|C|6134
5IT9|1|i|C|6135
5IT9|1|i|U|6136
5IT9|1|i|A|6137
5IT9|1|i|G|6138
*
5IT9|1|i|C|6150
5IT9|1|i|A|6151
5IT9|1|i|A|6152
5IT9|1|i|U|6153
5IT9|1|i|A|6154
5IT9|1|i|U|6155
5IT9|1|i|C|6156

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains

Chain F

Ribosomal protein uS7