IL_5IT9_093

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAUCGUU*AAAUUUC

Length

16 nucleotides

Bulged bases

5IT9|1|2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|G|109
5IT9|1|2|U|110
5IT9|1|2|U|111
5IT9|1|2|A|112
5IT9|1|2|U|113
5IT9|1|2|C|114
5IT9|1|2|G|115
5IT9|1|2|U|116
5IT9|1|2|U|117
*
5IT9|1|2|A|298
5IT9|1|2|A|299
5IT9|1|2|A|300
5IT9|1|2|U|301
5IT9|1|2|U|302
5IT9|1|2|U|303
5IT9|1|2|C|304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17