IL_5IT9_094

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAU*AAUU

Length

7 nucleotides

Bulged bases

5IT9|1|2|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_094 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2736

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5IT9|1|2|G|479
5IT9|1|2|A|480
5IT9|1|2|U|481
*
5IT9|1|2|A|504
5IT9|1|2|A|505
5IT9|1|2|U|506
5IT9|1|2|U|507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain e

Ribosomal protein eS30