IL_5IT9_095

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAACCUGUA*UGCAGGCGAAC

Length

22 nucleotides

Bulged bases

5IT9|1|2|C|704, 5IT9|1|2|C|731, 5IT9|1|2|G|732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|G|703
5IT9|1|2|C|704
5IT9|1|2|U|705
5IT9|1|2|A|706
5IT9|1|2|A|707
5IT9|1|2|C|708
5IT9|1|2|C|709
5IT9|1|2|U|710
5IT9|1|2|G|711
5IT9|1|2|U|712
5IT9|1|2|A|713
*
5IT9|1|2|U|725
5IT9|1|2|G|726
5IT9|1|2|C|727
5IT9|1|2|A|728
5IT9|1|2|G|729
5IT9|1|2|G|730
5IT9|1|2|C|731
5IT9|1|2|G|732
5IT9|1|2|A|733
5IT9|1|2|A|734
5IT9|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6