IL_5IT9_097

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUUGG*CCAUC

Length

11 nucleotides

Bulged bases

5IT9|1|2|U|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_097 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.5189

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|G|818
5IT9|1|2|U|819
5IT9|1|2|U|820
5IT9|1|2|U|821
5IT9|1|2|G|822
5IT9|1|2|G|823
*
5IT9|1|2|C|847
5IT9|1|2|C|848
5IT9|1|2|A|849
5IT9|1|2|U|850
5IT9|1|2|C|851

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein uS17