IL_5IT9_100

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACAAUAAGGAUUG*CUUGAUUUUGUG

Length

26 nucleotides

Bulged bases

5IT9|1|2|G|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|C|1219
5IT9|1|2|A|1220
5IT9|1|2|C|1221
5IT9|1|2|A|1222
5IT9|1|2|A|1223
5IT9|1|2|U|1224
5IT9|1|2|A|1225
5IT9|1|2|A|1226
5IT9|1|2|G|1227
5IT9|1|2|G|1228
5IT9|1|2|A|1229
5IT9|1|2|U|1230
5IT9|1|2|U|1231
5IT9|1|2|G|1232
*
5IT9|1|2|C|1251
5IT9|1|2|U|1252
5IT9|1|2|U|1253
5IT9|1|2|G|1254
5IT9|1|2|A|1255
5IT9|1|2|U|1256
5IT9|1|2|U|1257
5IT9|1|2|U|1258
5IT9|1|2|U|1259
5IT9|1|2|G|1260
5IT9|1|2|U|1261
5IT9|1|2|G|1262

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein eS10

Chain M

Ribosomal protein eS12

Chain d

Ribosomal protein eS29

Chain f

Ribosomal protein eS31