IL_5IT9_102

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAAUAG*CUUCUUA

Length

14 nucleotides

Bulged bases

5IT9|1|2|A|1345, 5IT9|1|2|U|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|U|1342
5IT9|1|2|A|1343
5IT9|1|2|A|1344
5IT9|1|2|A|1345
5IT9|1|2|U|1346
5IT9|1|2|A|1347
5IT9|1|2|G|1348
*
5IT9|1|2|C|1374
5IT9|1|2|U|1375
5IT9|1|2|U|1376
5IT9|1|2|C|1377
5IT9|1|2|U|1378
5IT9|1|2|U|1379
5IT9|1|2|A|1380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein uS3

Chain Q

Ribosomal protein uS9

Chain U

Ribosomal protein uS10

Chain g

Ribosomal protein RACK1