IL_5IT9_103

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUGUGAUCUUGC*GUAGUGCUAU

Length

22 nucleotides

Bulged bases

5IT9|1|i|A|6039

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|i|A|6034
5IT9|1|i|U|6035
5IT9|1|i|G|6036
5IT9|1|i|U|6037
5IT9|1|i|G|6038
5IT9|1|i|A|6039
5IT9|1|i|U|6040
5IT9|1|i|C|6041
5IT9|1|i|U|6042
5IT9|1|i|U|6043
5IT9|1|i|G|6044
5IT9|1|i|C|6045
*
5IT9|1|i|G|6082
5IT9|1|i|U|6083
5IT9|1|i|A|6084
5IT9|1|i|G|6085
5IT9|1|i|U|6086
5IT9|1|i|G|6087
5IT9|1|i|C|6088
5IT9|1|i|U|6089
5IT9|1|i|A|6090
5IT9|1|i|U|6091

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains