IL_5IT9_105

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT9_105 not in the Motif Atlas

Homologous match to IL_8P9A_450

Geometric discrepancy: 0.1833

The information below is about IL_8P9A_450

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5IT9|1|2|C|1493
5IT9|1|2|U|1494
5IT9|1|2|U|1495
5IT9|1|2|G|1496
*
5IT9|1|2|C|1507
5IT9|1|2|U|1508
5IT9|1|2|G|1509
5IT9|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

Ribosomal protein eS19