IL_5IWA_070

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCAC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IWA_070 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.4531

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5IWA|1|A|G|1405
5IWA|1|A|U|1406
5IWA|1|A|C|1407
5IWA|1|A|A|1408
5IWA|1|A|C|1409
*
5IWA|1|A|G|1491
5IWA|1|A|A|1492
5IWA|1|A|A|1493
5IWA|1|A|G|1494
5IWA|1|A|U|1495
5IWA|1|A|C|1496

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12