IL_5J30_017
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J30_017 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.0907
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J30|1|QA|G|409
5J30|1|QA|G|410
5J30|1|QA|A|411
5J30|1|QA|A|412
5J30|1|QA|G|413
5J30|1|QA|A|414
5J30|1|QA|A|415
5J30|1|QA|G|416
*
5J30|1|QA|U|427
5J30|1|QA|G|428
5J30|1|QA|U|429
5J30|1|QA|A|430
5J30|1|QA|A|431
5J30|1|QA|A|432
5J30|1|QA|C|433
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QD
- 30S ribosomal protein S4
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: