IL_5J30_125

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5J30|1|RA|G|1801, 5J30|1|RA|G|1816, 5J30|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_125 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.034

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5J30|1|RA|U|1798
5J30|1|RA|G|1799
5J30|1|RA|C|1800
5J30|1|RA|G|1801
5J30|1|RA|A|1802
5J30|1|RA|A|1803
5J30|1|RA|C|1804
*
5J30|1|RA|G|1813
5J30|1|RA|G|1814
5J30|1|RA|A|1815
5J30|1|RA|G|1816
5J30|1|RA|G|1817
5J30|1|RA|U|1818
5J30|1|RA|A|1819
5J30|1|RA|U|1820
5J30|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2