IL_5J30_132
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 5J30|1|RA|A|1938, 5J30|1|RA|U|1944, 5J30|1|RA|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J30_132 not in the Motif Atlas
- Homologous match to IL_7RQB_077
- Geometric discrepancy: 0.0465
- The information below is about IL_7RQB_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J30|1|RA|C|1934
5J30|1|RA|G|1935
5J30|1|RA|A|1936
5J30|1|RA|A|1937
5J30|1|RA|A|1938
5J30|1|RA|5MU|1939
5J30|1|RA|U|1940
5J30|1|RA|C|1941
5J30|1|RA|5MC|1942
5J30|1|RA|U|1943
5J30|1|RA|U|1944
5J30|1|RA|G|1945
*
5J30|1|RA|C|1961
5J30|1|RA|5MC|1962
5J30|1|RA|U|1963
5J30|1|RA|G|1964
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QY
- Peptide chain release factor 1
- Chain RD
- 50S ribosomal protein L2
Coloring options: