IL_5J30_183

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_183 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0805

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5J30|1|XA|G|292
5J30|1|XA|G|293
*
5J30|1|XA|U|304
5J30|1|XA|G|305
5J30|1|XA|G|306
5J30|1|XA|C|307
5J30|1|XA|C|308

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16