IL_5J30_268

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5J30|1|YA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_268 not in the Motif Atlas

Homologous match to IL_7RQB_038

Geometric discrepancy: 0.089

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

5J30|1|YA|G|1011
5J30|1|YA|U|1012
5J30|1|YA|C|1013
*
5J30|1|YA|G|1149
5J30|1|YA|C|1150

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YN

50S ribosomal protein L13

Chain YU

50S ribosomal protein L20