IL_5J30_313

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_313 not in the Motif Atlas

Geometric match to IL_4PCJ_001

Geometric discrepancy: 0.2209

The information below is about IL_4PCJ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5J30|1|YA|C|2108
5J30|1|YA|U|2109
5J30|1|YA|G|2110
*
5J30|1|YA|C|2179
5J30|1|YA|U|2180
5J30|1|YA|G|2181

Current chains

Chain YA

23S rRNA

Nearby chains