IL_5J30_360

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J30_360 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.0697

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5J30|1|XA|G|1405
5J30|1|XA|U|1406
5J30|1|XA|5MC|1407
*
5J30|1|XA|G|1494
5J30|1|XA|U|1495
5J30|1|XA|C|1496

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XX

messenger RNA

Chain XY

Peptide chain release factor 1

Chain YA

Large subunit ribosomal RNA; LSU rRNA