IL_5J3C_019

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_019 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.1504

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5J3C|1|QA|G|450
5J3C|1|QA|A|451
5J3C|1|QA|A|452
5J3C|1|QA|A|453
5J3C|1|QA|C|454
5J3C|1|QA|C|455
5J3C|1|QA|C|456
*
5J3C|1|QA|G|475
5J3C|1|QA|G|476
5J3C|1|QA|A|477
5J3C|1|QA|C|479
5J3C|1|QA|U|480
5J3C|1|QA|G|481
5J3C|1|QA|A|482
5J3C|1|QA|C|483

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16