3D structure

PDB id
5J3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.04 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
5J3C|1|RA|G|1801, 5J3C|1|RA|G|1816, 5J3C|1|RA|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5J3C_128 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.0414
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

5J3C|1|RA|U|1798
5J3C|1|RA|G|1799
5J3C|1|RA|C|1800
5J3C|1|RA|G|1801
5J3C|1|RA|A|1802
5J3C|1|RA|A|1803
5J3C|1|RA|C|1804
*
5J3C|1|RA|G|1813
5J3C|1|RA|G|1814
5J3C|1|RA|A|1815
5J3C|1|RA|G|1816
5J3C|1|RA|G|1817
5J3C|1|RA|U|1818
5J3C|1|RA|A|1819
5J3C|1|RA|U|1820
5J3C|1|RA|A|1821

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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