3D structure

PDB id
5J3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.04 Å

Loop

Sequence
GA*UACC
Length
6 nucleotides
Bulged bases
5J3C|1|RA|A|2439
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5J3C_139 not in the Motif Atlas
Homologous match to IL_5J7L_324
Geometric discrepancy: 0.059
The information below is about IL_5J7L_324
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

5J3C|1|RA|G|2070
5J3C|1|RA|A|2071
*
5J3C|1|RA|U|2438
5J3C|1|RA|A|2439
5J3C|1|RA|C|2440
5J3C|1|RA|C|2441

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QV
Transfer RNA; tRNA
Chain QY
Peptide chain release factor 1
Chain RD
50S ribosomal protein L2

Coloring options:


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