IL_5J3C_156

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5J3C|1|RA|A|2572, 5J3C|1|RA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_156 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.0581

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5J3C|1|RA|C|2512
5J3C|1|RA|G|2513
*
5J3C|1|RA|C|2571
5J3C|1|RA|A|2572
5J3C|1|RA|C|2573
5J3C|1|RA|G|2574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QY

Peptide chain release factor 1

Chain RE

50S ribosomal protein L3