3D structure

PDB id
5J3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.04 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5J3C_239 not in the Motif Atlas
Homologous match to IL_7RQB_005
Geometric discrepancy: 0.0978
The information below is about IL_7RQB_005
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_76488.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
36

Unit IDs

5J3C|1|YA|C|183
5J3C|1|YA|C|184
*
5J3C|1|YA|G|212
5J3C|1|YA|A|213
5J3C|1|YA|G|214

Current chains

Chain YA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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