IL_5J3C_276

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5J3C|1|YA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_276 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.3471

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5J3C|1|YA|G|1087
5J3C|1|YA|A|1088
5J3C|1|YA|G|1089
5J3C|1|YA|U|1090
5J3C|1|YA|G|1091
*
5J3C|1|YA|C|1100
5J3C|1|YA|U|1101
5J3C|1|YA|C|1102

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6