IL_5J3C_280

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

5J3C|1|YA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_280 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.0716

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5J3C|1|YA|G|1219
5J3C|1|YA|A|1220
5J3C|1|YA|C|1221|||A
*
5J3C|1|YA|G|1229
5J3C|1|YA|C|1230

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YU

50S ribosomal protein L20

Chain YV

50S ribosomal protein L21