IL_5J3C_308

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_308 not in the Motif Atlas

Geometric match to IL_7RQB_076

Geometric discrepancy: 0.0623

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

5J3C|1|YA|G|1933
5J3C|1|YA|C|1934
*
5J3C|1|YA|G|1964
5J3C|1|YA|C|1965
5J3C|1|YA|A|1966
5J3C|1|YA|C|1967

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA