3D structure

PDB id
5J3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.04 Å

Loop

Sequence
CUGA*UGG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5J3C_325 not in the Motif Atlas
Homologous match to IL_7RQB_093
Geometric discrepancy: 0.0732
The information below is about IL_7RQB_093
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_63450.2
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
8

Unit IDs

5J3C|1|YA|C|2456
5J3C|1|YA|U|2457
5J3C|1|YA|G|2458
5J3C|1|YA|A|2459
*
5J3C|1|YA|U|2493
5J3C|1|YA|G|2494
5J3C|1|YA|G|2495

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XY
Peptide chain release factor 1
Chain YQ
50S ribosomal protein L16

Coloring options:


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