IL_5J3C_326

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

5J3C|1|YA|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_326 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.094

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

5J3C|1|YA|A|2459
5J3C|1|YA|U|2460
5J3C|1|YA|C|2461
*
5J3C|1|YA|G|2489
5J3C|1|YA|G|2490
5J3C|1|YA|U|2491
5J3C|1|YA|U|2492
5J3C|1|YA|U|2493

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XY

Peptide chain release factor 1

Chain YQ

50S ribosomal protein L16