IL_5J3C_332

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GAA*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J3C_332 not in the Motif Atlas

Homologous match to IL_7RQB_100

Geometric discrepancy: 0.0549

The information below is about IL_7RQB_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J3C|1|YA|G|2588
5J3C|1|YA|A|2589
5J3C|1|YA|A|2590
*
5J3C|1|YA|U|2604
5J3C|1|YA|PSU|2605
5J3C|1|YA|C|2606

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XY

Peptide chain release factor 1

Chain YD

50S ribosomal protein L2