IL_5J3C_363
3D structure
- PDB id
- 5J3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.04 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 5J3C|1|XA|A|1492, 5J3C|1|XA|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J3C_363 not in the Motif Atlas
- Geometric match to IL_8UO6_002
- Geometric discrepancy: 0.2516
- The information below is about IL_8UO6_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
5J3C|1|XA|5MC|1407
5J3C|1|XA|A|1408
5J3C|1|XA|C|1409
*
5J3C|1|XA|G|1491
5J3C|1|XA|A|1492
5J3C|1|XA|A|1493
5J3C|1|XA|G|1494
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
- Chain XX
- messenger RNA
- Chain XY
- Peptide chain release factor 1
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: