IL_5J4B_041
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5J4B|1|1A|A|1092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_041 not in the Motif Atlas
- Homologous match to IL_7RQB_042
- Geometric discrepancy: 0.1046
- The information below is about IL_7RQB_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5J4B|1|1A|C|1089
5J4B|1|1A|G|1090
5J4B|1|1A|A|1091
5J4B|1|1A|A|1092
5J4B|1|1A|G|1093
5J4B|1|1A|A|1094
5J4B|1|1A|C|1095
5J4B|1|1A|A|1096
5J4B|1|1A|G|1097
*
5J4B|1|1A|U|1154
5J4B|1|1A|C|1155
5J4B|1|1A|G|1156
5J4B|1|1A|A|1157
5J4B|1|1A|G|1158
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
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