IL_5J4B_044

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

5J4B|1|1A|G|1294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_044 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0461

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5J4B|1|1A|C|1241
5J4B|1|1A|G|1242
5J4B|1|1A|U|1243
*
5J4B|1|1A|A|1293
5J4B|1|1A|G|1294
5J4B|1|1A|U|1295
5J4B|1|1A|G|1296

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20