IL_5J4B_069

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5J4B|1|1A|G|1832, 5J4B|1|1A|G|1847, 5J4B|1|1A|U|1851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0355

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5J4B|1|1A|U|1829
5J4B|1|1A|G|1830
5J4B|1|1A|C|1831
5J4B|1|1A|G|1832
5J4B|1|1A|A|1833
5J4B|1|1A|A|1834
5J4B|1|1A|C|1835
*
5J4B|1|1A|G|1844
5J4B|1|1A|G|1845
5J4B|1|1A|A|1846
5J4B|1|1A|G|1847
5J4B|1|1A|G|1848
5J4B|1|1A|U|1849
5J4B|1|1A|A|1850
5J4B|1|1A|U|1851
5J4B|1|1A|A|1852

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA