IL_5J4B_086

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAACC*GGGGAG

Length

15 nucleotides

Bulged bases

5J4B|1|1A|U|2154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|1A|C|2151
5J4B|1|1A|U|2152
5J4B|1|1A|G|2153
5J4B|1|1A|U|2154
5J4B|1|1A|G|2155
5J4B|1|1A|A|2156
5J4B|1|1A|A|2157
5J4B|1|1A|C|2158
5J4B|1|1A|C|2159
*
5J4B|1|1A|G|2176
5J4B|1|1A|G|2177
5J4B|1|1A|G|2178
5J4B|1|1A|G|2179
5J4B|1|1A|A|2180
5J4B|1|1A|G|2181

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains