IL_5J4B_112
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAACC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_112 not in the Motif Atlas
- Homologous match to IL_7RQB_112
- Geometric discrepancy: 0.0664
- The information below is about IL_7RQB_112
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4B|1|1B|G|23
5J4B|1|1B|G|24
5J4B|1|1B|A|25
5J4B|1|1B|A|26
5J4B|1|1B|C|27
5J4B|1|1B|C|28
*
5J4B|1|1B|G|56
5J4B|1|1B|A|57
5J4B|1|1B|A|58
5J4B|1|1B|A|59
5J4B|1|1B|C|60
Current chains
- Chain 1B
- 5S ribosomal RNA
Nearby chains
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
Coloring options: