IL_5J4B_140

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_140 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.0854

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

5J4B|1|1a|G|597
5J4B|1|1a|U|598
*
5J4B|1|1a|A|640
5J4B|1|1a|U|641
5J4B|1|1a|A|642
5J4B|1|1a|C|643

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1h

30S ribosomal protein S8

Chain 1q

30S ribosomal protein S17