IL_5J4B_159

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

5J4B|1|1a|C|1200, 5J4B|1|1a|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_159 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0688

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5J4B|1|1a|G|1057
5J4B|1|1a|G|1058
*
5J4B|1|1a|U|1199
5J4B|1|1a|C|1200
5J4B|1|1a|A|1201
5J4B|1|1a|G|1202
5J4B|1|1a|C|1203

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z