IL_5J4B_164
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_164 not in the Motif Atlas
- Geometric match to IL_5J7L_053
- Geometric discrepancy: 0.1233
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5J4B|1|1a|C|1158
5J4B|1|1a|U|1159
5J4B|1|1a|G|1160
5J4B|1|1a|C|1161
*
5J4B|1|1a|G|1175
5J4B|1|1a|A|1176
5J4B|1|1a|G|1177
5J4B|1|1a|G|1178
5J4B|1|1a|A|1179
5J4B|1|1a|A|1180
5J4B|1|1a|G|1181
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1i
- 30S ribosomal protein S9
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