IL_5J4B_184
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_184 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.0363
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5J4B|1|2A|G|188
5J4B|1|2A|G|189
5J4B|1|2A|A|190
5J4B|1|2A|A|191
5J4B|1|2A|C|192
5J4B|1|2A|U|193
5J4B|1|2A|G|194
*
5J4B|1|2A|C|201
5J4B|1|2A|U|202
5J4B|1|2A|C|203
5J4B|1|2A|A|204
5J4B|1|2A|G|205
5J4B|1|2A|U|206
5J4B|1|2A|A|207
5J4B|1|2A|C|208
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L28
- Chain 27
- 50S ribosomal protein L34
- Chain 28
- 50S ribosomal protein L35
- Chain 2P
- 50S ribosomal protein L15
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