IL_5J4B_190

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_190 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.0786

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

5J4B|1|2A|U|293
5J4B|1|2A|A|294
5J4B|1|2A|G|295
*
5J4B|1|2A|C|343
5J4B|1|2A|G|344
5J4B|1|2A|A|345
5J4B|1|2A|A|346
5J4B|1|2A|A|347

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Y

50S ribosomal protein L24