IL_5J4B_200

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

5J4B|1|2A|G|776, 5J4B|1|2A|A|788, 5J4B|1|2A|A|789, 5J4B|1|2A|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_200 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.054

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J4B|1|2A|G|775
5J4B|1|2A|G|776
5J4B|1|2A|A|777
*
5J4B|1|2A|U|787
5J4B|1|2A|A|788
5J4B|1|2A|A|789
5J4B|1|2A|C|790
5J4B|1|2A|C|791

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22