IL_5J4B_224

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_224 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0387

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5J4B|1|2A|A|1262
5J4B|1|2A|U|1263
5J4B|1|2A|G|1264
5J4B|1|2A|A|1265
5J4B|1|2A|G|1266
5J4B|1|2A|U|1267
5J4B|1|2A|A|1268
5J4B|1|2A|A|1269
*
5J4B|1|2A|U|2011
5J4B|1|2A|G|2012
5J4B|1|2A|A|2013
5J4B|1|2A|A|2014
5J4B|1|2A|A|2015
5J4B|1|2A|U|2016
5J4B|1|2A|U|2017

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22