IL_5J4B_259

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_259 not in the Motif Atlas

Homologous match to IL_8VTW_084

Geometric discrepancy: 0.4773

The information below is about IL_8VTW_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|2A|G|2110
5J4B|1|2A|C|2111
5J4B|1|2A|G|2112
5J4B|1|2A|U|2113
5J4B|1|2A|A|2114
5J4B|1|2A|G|2115
5J4B|1|2A|G|2116
5J4B|1|2A|A|2117
5J4B|1|2A|U|2118
5J4B|1|2A|A|2119
5J4B|1|2A|G|2120
*
5J4B|1|2A|C|2178
5J4B|1|2A|C|2179

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA