IL_5J4B_274

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5J4B|1|2A|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_274 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.0655

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

5J4B|1|2A|U|2522
5J4B|1|2A|G|2523
*
5J4B|1|2A|C|2540
5J4B|1|2A|A|2541
5J4B|1|2A|A|2542
5J4B|1|2A|G|2543

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2N

50S ribosomal protein L13