IL_5J4B_286

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_286 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2219

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5J4B|1|2B|U|8
5J4B|1|2B|G|9
5J4B|1|2B|C|10
*
5J4B|1|2B|G|111
5J4B|1|2B|U|112
5J4B|1|2B|G|113

Current chains

Chain 2B

5S ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2S

50S ribosomal protein L18