IL_5J4B_309

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

5J4B|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_309 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1011

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5J4B|1|2a|G|409
5J4B|1|2a|G|410
5J4B|1|2a|A|411
5J4B|1|2a|A|412
5J4B|1|2a|G|413
5J4B|1|2a|A|414
5J4B|1|2a|A|415
5J4B|1|2a|G|416
*
5J4B|1|2a|U|427
5J4B|1|2a|G|428
5J4B|1|2a|U|429
5J4B|1|2a|A|430
5J4B|1|2a|A|431
5J4B|1|2a|A|432
5J4B|1|2a|C|433

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4