IL_5J4B_344

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4B_344 not in the Motif Atlas

Geometric match to IL_4LFB_053

Geometric discrepancy: 0.2048

The information below is about IL_4LFB_053

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_58310.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

25

Unit IDs

5J4B|1|2a|C|1259
5J4B|1|2a|C|1260
*
5J4B|1|2a|G|1274
5J4B|1|2a|A|1275
5J4B|1|2a|G|1276

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2u

30S ribosomal protein Thx