IL_5J4B_358
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4B_358 not in the Motif Atlas
- Homologous match to IL_9DFE_066
- Geometric discrepancy: 0.0549
- The information below is about IL_9DFE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
5J4B|1|1A|G|1713
5J4B|1|1A|G|1714
5J4B|1|1A|A|1715
5J4B|1|1A|A|1716
5J4B|1|1A|C|1717
5J4B|1|1A|U|1718
5J4B|1|1A|C|1719
5J4B|1|1A|U|1720
5J4B|1|1A|G|1721
*
5J4B|1|1A|C|2012
5J4B|1|1A|U|2013
5J4B|1|1A|G|2014
5J4B|1|1A|U|2015
5J4B|1|1A|C|2016
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
- Chain 1T
- 50S ribosomal protein L19
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