IL_5J4C_262

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4C|1|2A|G|2124
5J4C|1|2A|G|2125
5J4C|1|2A|A|2126
5J4C|1|2A|G|2127
5J4C|1|2A|C|2128
5J4C|1|2A|C|2129
*
5J4C|1|2A|G|2159
5J4C|1|2A|G|2160
5J4C|1|2A|C|2161
5J4C|1|2A|G|2162
5J4C|1|2A|C|2163
5J4C|1|2A|C|2164
5J4C|1|2A|G|2165
5J4C|1|2A|G|2166
5J4C|1|2A|U|2167
5J4C|1|2A|G|2168
5J4C|1|2A|A|2169
5J4C|1|2A|A|2170
5J4C|1|2A|A|2171
5J4C|1|2A|U|2172
5J4C|1|2A|A|2173
5J4C|1|2A|C|2174

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA