IL_5J4C_384

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

5J4C|1|1A|U|2154, 5J4C|1|1A|A|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4C_384 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.5177

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5J4C|1|1A|C|2151
5J4C|1|1A|U|2152
5J4C|1|1A|G|2153
5J4C|1|1A|U|2154
5J4C|1|1A|G|2155
5J4C|1|1A|A|2156
5J4C|1|1A|A|2157
5J4C|1|1A|C|2158
*
5J4C|1|1A|G|2177
5J4C|1|1A|G|2178
5J4C|1|1A|G|2179
5J4C|1|1A|A|2180
5J4C|1|1A|G|2181

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains