IL_5J4D_007

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

5J4D|1|A|G|129|||B, 5J4D|1|A|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1047

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5J4D|1|A|U|129|||A
5J4D|1|A|G|129|||B
5J4D|1|A|A|130
5J4D|1|A|C|131
*
5J4D|1|A|G|231
5J4D|1|A|G|232

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S20

Chain YA

30S ribosomal protein S16

Chain ZA

30S ribosomal protein S17